3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09090

Details:

PFam ID : PF09090

PFam Domain Description : MIF4G like

Number of Sequence in 50% Dataset : 59

Number of Sequence in Full Dataset : 142

Average sequence length: 242.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09090	Q59QD1_CANAL_619_854	96.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09090	B4LSE0_DROVI_496_735	100

Sequence based PCA Plot of the family - PF09090 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=17
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay