3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09087

Details:

PFam ID : PF09087

PFam Domain Description : Cyclomaltodextrinase, N-terminal

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 87

Average sequence length: 85.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09087	A1S660_SHEAM_80_173	82.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09087	A1S660_SHEAM_80_173	100

Sequence based PCA Plot of the family - PF09087 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=17 Length=8
Motif3 Start=48 Length=8
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay