3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09086

Details:

PFam ID : PF09086

PFam Domain Description : Domain of unknown function (DUF1924)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 53

Average sequence length: 93.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09086	E1PKG3_PANVC_53_139	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09086	C9WLW5_RHOAD_1_67	100

Sequence based PCA Plot of the family - PF09086 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=54 Length=11
Motif3 Start=86 Length=8
Motif4 Start=71 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay