3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09084

Details:

PFam ID : PF09084

PFam Domain Description : NMT1/THI5 like

Number of Sequence in 50% Dataset : 765

Number of Sequence in Full Dataset : 2959

Average sequence length: 193.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09084	E1PKG3_PANVC_53_139	89.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09084	C1EC32_MICSR_14_48	100

Sequence based PCA Plot of the family - PF09084 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=135 Length=8
Motif3 Start=77 Length=8
Motif4 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay