3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09079

Details:

PFam ID : PF09079

PFam Domain Description : CDC6, C terminal

Number of Sequence in 50% Dataset : 72

Number of Sequence in Full Dataset : 274

Average sequence length: 80.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09079	C7DHZ3_9EURY_297_389	40.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09079	CDC18_SCHPO_483_564	99.6

Sequence based PCA Plot of the family - PF09079 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=27 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay