3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09078

Details:

PFam ID : PF09078

PFam Domain Description : CheY binding

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 79

Average sequence length: 63.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09078	C0AV08_9ENTR_168_218	28.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09078	D8IZY0_HERSS_133_197	100

Sequence based PCA Plot of the family - PF09078 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=18 Length=17
Motif2 Start=1 Length=8
Motif3 Start=48 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay