3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09072

Details:

PFam ID : PF09072

PFam Domain Description : Translation machinery associated TMA7

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 110

Average sequence length: 59.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09072	C9SN16_VERA1_55_87	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09072	Q0UM46_PHANO_58_95	100

Sequence based PCA Plot of the family - PF09072 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay