3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09071

Details:

PFam ID : PF09071

PFam Domain Description : Alpha-amylase, C terminal

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 7

Average sequence length: 57

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09071	E3NHD1_CAERE_418_496	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09071	Q973H4_SULTO_290_356	100

Sequence based PCA Plot of the family - PF09071 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay