3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09067

Details:

PFam ID : PF09067

PFam Domain Description : Erythropoietin receptor, ligand binding

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 130

Average sequence length: 96.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09067	B7T509_OREMO_24_81	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09067	C3ZUH6_BRAFL_168_266	100

Sequence based PCA Plot of the family - PF09067 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=17
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay