3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09066

Details:

PFam ID : PF09066

PFam Domain Description : Beta2-adaptin appendage, C-terminal sub-domain

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 120

Average sequence length: 108.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09066	A2FU96_TRIVA_615_723	88.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09066	D2VMT9_NAEGR_797_911	100

Sequence based PCA Plot of the family - PF09066 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay