3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09064

Details:

PFam ID : PF09064

PFam Domain Description : Thrombomodulin like fifth domain, EGF-like

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 13

Average sequence length: 32

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09064	A8QH95_BRUMA_177_213	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09064	A8QH95_BRUMA_177_213	100

Sequence based PCA Plot of the family - PF09064 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=8 Length=8
Motif2 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay