3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09055

Details:

PFam ID : PF09055

PFam Domain Description : Nickel-containing superoxide dismutase

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 79

Average sequence length: 126.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09055	B3T8I5_9ZZZZ_9_141	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09055	B7G9A2_PHATC_72_205	100

Sequence based PCA Plot of the family - PF09055 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=8
Motif2 Start=8 Length=17
Motif3 Start=58 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay