3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09046

Details:

PFam ID : PF09046

PFam Domain Description : AvrPtoB E3 ubiquitin ligase

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 6

Average sequence length: 97.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09046	C5JMT3_AJEDS_8_137	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09046	B5S0R3_RALSO_1_100	100

Sequence based PCA Plot of the family - PF09046 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay