3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09044

Details:

PFam ID : PF09044

PFam Domain Description : Kp4

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 23

Average sequence length: 110

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09044	C5JMT3_AJEDS_8_137	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09044	C5JMT3_AJEDS_8_137	100

Sequence based PCA Plot of the family - PF09044 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=17
Motif2 Start=1 Length=8
Motif3 Start=104 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay