3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09043

Details:

PFam ID : PF09043

PFam Domain Description : D-Lysine 5,6-aminomutase alpha subunit

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 55

Average sequence length: 456.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09043	B5X2W1_SALSA_5_62	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09043	Q21RL6_RHOFD_4_510	100

Sequence based PCA Plot of the family - PF09043 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=146 Length=8
Motif3 Start=69 Length=8
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay