3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09040

Details:

PFam ID : PF09040

PFam Domain Description : Gastric H+/K+-ATPase, N terminal domain

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 4

Average sequence length: 30

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09040	B0VMI6_ACIBS_108_210	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09040	F1MXW4_BOVIN_2_40	100

Sequence based PCA Plot of the family - PF09040 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay