3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09035

Details:

PFam ID : PF09035

PFam Domain Description : Excisionase from transposon Tn916

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 109

Average sequence length: 64.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09035	Q56R44_9CLOT_1_29	21.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09035	B6FMZ1_9CLOT_7_67	100

Sequence based PCA Plot of the family - PF09035 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=30 Length=8
Motif2 Start=12 Length=17
Motif3 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay