3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09029

Details:

PFam ID : PF09029

PFam Domain Description : 5-aminolevulinate synthase presequence

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 40

Average sequence length: 85.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09029	Q6DKE7_XENLA_1_123	92.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09029	Q6DKE7_XENLA_1_123	100

Sequence based PCA Plot of the family - PF09029 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=27 Length=18
Motif2 Start=18 Length=8
Motif3 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay