3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09027

Details:

PFam ID : PF09027

PFam Domain Description : GTPase binding

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 32

Average sequence length: 57.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09027	E5SWG6_TRISP_106_177	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09027	ERRFI_RAT_4_67	100

Sequence based PCA Plot of the family - PF09027 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=18
Motif2 Start=1 Length=11
Motif3 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay