3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09020

Details:

PFam ID : PF09020

PFam Domain Description : YopE, N terminal

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 2

Average sequence length: 30.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09020	D0W9Y3_NEILA_3_119	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09020	B0HNR5_YERPE_1_61	100

Sequence based PCA Plot of the family - PF09020 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay