3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09019

Details:

PFam ID : PF09019

PFam Domain Description : EcoRII C terminal

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 51

Average sequence length: 160.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09019	D0W9Y3_NEILA_3_119	11.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09019	E9XV99_ECOLX_78_252	100

Sequence based PCA Plot of the family - PF09019 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay