3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09017

Details:

PFam ID : PF09017

PFam Domain Description : Microbial transglutaminase

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 8

Average sequence length: 338

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09017	C9L2D0_9BACE_1_201	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09017	Q2VI01_STRMB_1_332	100

Sequence based PCA Plot of the family - PF09017 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=21
Motif2 Start=63 Length=8
Motif3 Start=242 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay