3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09015

Details:

PFam ID : PF09015

PFam Domain Description : NgoMIV restriction enzyme

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 27

Average sequence length: 223.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09015	C9L2D0_9BACE_1_201	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09015	E0KYM9_STRVO_13_148	96.1

Sequence based PCA Plot of the family - PF09015 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=118 Length=8
Motif3 Start=78 Length=8
Motif4 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay