3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09013

Details:

PFam ID : PF09013

PFam Domain Description : YopH, N-terminal

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 6

Average sequence length: 96.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09013	B4ADV6_BACPU_45_96	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09013	A8TCD3_9VIBR_3_122	100

Sequence based PCA Plot of the family - PF09013 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay