3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09011

Details:

PFam ID : PF09011

PFam Domain Description : Domain of unknown function (DUF1898)

Number of Sequence in 50% Dataset : 85

Number of Sequence in Full Dataset : 233

Average sequence length: 65.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09011	A8JHD4_CHLRE_211_277	63.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09011	D0MVY5_PHYIT_22_97	100

Sequence based PCA Plot of the family - PF09011 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay