3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09006

Details:

PFam ID : PF09006

PFam Domain Description : Lung surfactant protein D coiled-coil trimerisation

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 18

Average sequence length: 39.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09006	B7PN34_IXOSC_591_609	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09006	SFTPD_PIG_224_269	100

Sequence based PCA Plot of the family - PF09006 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay