3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09003

Details:

PFam ID : PF09003

PFam Domain Description : Bacteriophage lambda integrase, N-terminal domain

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 78

Average sequence length: 75.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09003	E3DDD1_ERWSE_1_61	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09003	E4PQQ1_MARAH_1_85	98.7

Sequence based PCA Plot of the family - PF09003 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay