3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09002

Details:

PFam ID : PF09002

PFam Domain Description : Domain of unknown function (DUF1887)

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 99

Average sequence length: 278.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09002	Q0ATY7_SYNWW_41_404	80.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09002	C7RSK4_ACCPU_16_417	100

Sequence based PCA Plot of the family - PF09002 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=8 Length=18
Motif2 Start=97 Length=8
Motif3 Start=258 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay