3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09001

Details:

PFam ID : PF09001

PFam Domain Description : Domain of unknown function (DUF1890)

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 29

Average sequence length: 136.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09001	O26871_METTH_10_153	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09001	O26871_METTH_10_153	100

Sequence based PCA Plot of the family - PF09001 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=78 Length=8
Motif2 Start=128 Length=8
Motif3 Start=3 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay