3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09000

Details:

PFam ID : PF09000

PFam Domain Description : Cytotoxic

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 32

Average sequence length: 78.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09000	D2Q124_KRIFD_2_65	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09000	Q3KGY0_PSEPF_313_395	100

Sequence based PCA Plot of the family - PF09000 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=32 Length=18
Motif2 Start=7 Length=8
Motif3 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay