3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08996

Details:

PFam ID : PF08996

PFam Domain Description : DNA Polymerase alpha zinc finger

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 146

Average sequence length: 183.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08996	D3BMP9_POLPA_1318_1498	96.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08996	D3BMP9_POLPA_1318_1498	100

Sequence based PCA Plot of the family - PF08996 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=218 Length=8
Motif2 Start=100 Length=8
Motif3 Start=5 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay