3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08993

Details:

PFam ID : PF08993

PFam Domain Description : T4 gene Gp59 loader of gp41 DNA helicase

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 31

Average sequence length: 85.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08993	C9MZB3_9FUSO_1_62	42.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08993	C8XUD9_9CAUD_14_110	96.6

Sequence based PCA Plot of the family - PF08993 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=39 Length=8
Motif2 Start=30 Length=8
Motif3 Start=21 Length=8
Motif4 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay