3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08992

Details:

PFam ID : PF08992

PFam Domain Description : Quinohemoprotein amine dehydrogenase, gamma subunit

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 20

Average sequence length: 73.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08992	Q2G3V8_NOVAD_34_108	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08992	Q2G3V8_NOVAD_34_108	100

Sequence based PCA Plot of the family - PF08992 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=11
Motif2 Start=1 Length=8
Motif3 Start=11 Length=8
Motif4 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay