3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08990

Details:

PFam ID : PF08990

PFam Domain Description : Erythronolide synthase docking

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 357

Average sequence length: 26.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08990	F0H6B6_9BACT_2_61	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08990	D9WMJ0_9ACTO_63_89	100

Sequence based PCA Plot of the family - PF08990 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=11
Motif2 Start=17 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay