3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08989

Details:

PFam ID : PF08989

PFam Domain Description : Domain of unknown function (DUF1896)

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 56

Average sequence length: 134.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08989	F0H6B6_9BACT_2_61	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08989	Q7MUP8_PORGI_1_146	100

Sequence based PCA Plot of the family - PF08989 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay