3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08985

Details:

PFam ID : PF08985

PFam Domain Description : Domain of unknown function (DUF1888)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 12

Average sequence length: 107.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08985	A0Y572_9GAMM_1_126	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08985	B8CII3_SHEPW_1_128	100

Sequence based PCA Plot of the family - PF08985 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=116 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay