3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08982

Details:

PFam ID : PF08982

PFam Domain Description : Domain of unknown function (DUF1857)

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 61

Average sequence length: 148.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08982	B0Y819_ASPFC_11_166	85.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08982	F0XAR3_9PEZI_5_165	100

Sequence based PCA Plot of the family - PF08982 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=25 Length=8
Motif3 Start=1 Length=8
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay