3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08975

Details:

PFam ID : PF08975

PFam Domain Description : Domain of unknown function (DUF1868)

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 45

Average sequence length: 113.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08975	127L_IIV6_7_75	95.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08975	Q9A7D3_CAUCR_44_170	100

Sequence based PCA Plot of the family - PF08975 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=30 Length=8
Motif2 Start=12 Length=17
Motif3 Start=50 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay