3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08972

Details:

PFam ID : PF08972

PFam Domain Description : Domain of unknown function (DUF1902)

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 36

Average sequence length: 51.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08972	A6CL57_9BACI_1_43	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08972	E1MIG3_9GAMM_13_55	97.1

Sequence based PCA Plot of the family - PF08972 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay