3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08969

Details:

PFam ID : PF08969

PFam Domain Description : Domain of unknown function (DUF1873)

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 43

Average sequence length: 99.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08969	E2ARF8_9HYME_6_111	57.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08969	Q7QD14_ANOGA_2_113	97.6

Sequence based PCA Plot of the family - PF08969 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay