3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08966

Details:

PFam ID : PF08966

PFam Domain Description : Domain of unknown function (DUF1882)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 26

Average sequence length: 69.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08966	E7G3B0_9HELI_1_70	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08966	E7G3B0_9HELI_1_70	100

Sequence based PCA Plot of the family - PF08966 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=28 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay