3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08961

Details:

PFam ID : PF08961

PFam Domain Description : Domain of unknown function (DUF1875)

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 12

Average sequence length: 168.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08961	C9JGX3_HUMAN_79_236	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08961	F1M0A2_RAT_18_250	100

Sequence based PCA Plot of the family - PF08961 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=128 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay