3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08960

Details:

PFam ID : PF08960

PFam Domain Description : Domain of unknown function (DUF1874)

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 30

Average sequence length: 100.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08960	A8M8W1_CALMQ_1_109	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08960	Y114_SIRV1_1_113	100

Sequence based PCA Plot of the family - PF08960 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay