3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08956

Details:

PFam ID : PF08956

PFam Domain Description : Domain of unknown function (DUF1869)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 15

Average sequence length: 54.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08956	E0VK18_PEDHC_284_321	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08956	D7YK87_ECOLX_1_55	100

Sequence based PCA Plot of the family - PF08956 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay