3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08954

Details:

PFam ID : PF08954

PFam Domain Description : Domain of unknown function (DUF1900)

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 236

Average sequence length: 128.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08954	E0VK18_PEDHC_284_321	77.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08954	E3JXT4_PUCGT_764_911	100

Sequence based PCA Plot of the family - PF08954 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=80 Length=8
Motif3 Start=100 Length=8
Motif4 Start=113 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay