3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08952

Details:

PFam ID : PF08952

PFam Domain Description : Domain of unknown function (DUF1866)

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 31

Average sequence length: 130.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08952	C3YX23_BRAFL_858_924	81.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08952	E9H8J2_DAPPU_848_996	100

Sequence based PCA Plot of the family - PF08952 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay