3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08951

Details:

PFam ID : PF08951

PFam Domain Description : Enterocin A Immunity

Number of Sequence in 50% Dataset : 87

Number of Sequence in Full Dataset : 206

Average sequence length: 73.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08951	F0EJT4_ENTCA_3_95	16.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08951	E8JWZ9_STRCR_8_79	54

Sequence based PCA Plot of the family - PF08951 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay