3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08949

Details:

PFam ID : PF08949

PFam Domain Description : Domain of unknown function (DUF1860)

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 3

Average sequence length: 146

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08949	Q3T4Y4_BPPRD_1_126	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08949	Q3T4Y3_BPPRD_122_340	100

Sequence based PCA Plot of the family - PF08949 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=27 Length=8
Motif2 Start=9 Length=17
Motif3 Start=69 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay