3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08947

Details:

PFam ID : PF08947

PFam Domain Description : BPS (Between PH and SH2)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 23

Average sequence length: 43.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08947	A9JRY9_DANRE_416_478	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08947	E2A7P8_9HYME_1_34	100

Sequence based PCA Plot of the family - PF08947 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=11
Motif2 Start=11 Length=8
Motif3 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay