3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08944

Details:

PFam ID : PF08944

PFam Domain Description : NADPH oxidase subunit p47Phox, C terminal domain

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 28

Average sequence length: 57.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08944	A9JRY9_DANRE_416_478	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08944	A9JRY9_DANRE_416_478	100

Sequence based PCA Plot of the family - PF08944 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay